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Following presentation of theoretical results, experimental methods to measure the optical transfer function of each class of system are presented, with a focus on suitable methods for the establishment of calibration standards in 3D imaging and surface topography measurements. Polychromatic transfer functions and surface topography measurements are also discussed. Further generalizations are reviewed allowing the extension of the theory to the description of conventional and interferometric 3D imaging systems. Starting from the basis of a spatially coherent, monochromatic confocal scanning imaging system, the theory of optical transfer functions in three-dimensional (3D) imaging is presented. Here a review is given of techniques for the measurement of optical transfer functions. Studying the optical transfer function of the instrument can help address this issue. However, implementation of optical instrumentation into production is currently difficult due to the lack of understanding of the complex interaction between the light and the component surface. A significant number of areal surface topography measuring instruments, largely based on optical techniques, are commercially available.